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1

Coupled Petri nets for computer network risk analysis

Matthew H. Henry, Ryan M. Layer, David R. Zaret

Journal:

International Journal of Critical Infrastructure Protection

Year:

2010

Language:

english

File:

PDF, 909 KB

english, 2010

2

Origin of silicic volcanism in the Panamanian arc: evidence for a two-stage fractionation process at El Valle volcano

Paulo J. Hidalgo, Thomas A. Vogel, Tyrone O. Rooney, Ryan M. Currier, Paul W. Layer

Journal:

Contributions to Mineralogy and Petrology

Year:

2011

Language:

english

File:

PDF, 2.46 MB

english, 2011

3

An evaluation of a high-probability instructional sequence to increase acceptance of food and decrease inappropriate behavior in children with pediatric feeding disorders

Meeta R. Patel, Gregory K. Reed, Cathleen C. Piazza, Melanie H. Bachmeyer, Stacy A. Layer, Ryan S. Pabico

Journal:

Research in Developmental Disabilities

Year:

2006

Language:

english

File:

PDF, 165 KB

english, 2006

4

[IEEE 2009 IEEE Conference on Technologies for Homeland Security (HST) - Waltham, MA, USA (2009.05.11-2009.05.12)] 2009 IEEE Conference on Technologies for Homeland Security - Evaluating the risk of cyber attacks on SCADA systems via Petri net analysis with application to hazardous liquid loading operations

Henry, Matthew H., Layer, Ryan M., Snow, Kevin Z., Zaret, David R.

Year:

2009

Language:

english

File:

PDF, 557 KB

english, 2009

5

[IEEE 2012 IEEE Frontiers in Education Conference (FIE) - Seattle, WA, USA (2012.10.3-2012.10.6)] 2012 Frontiers in Education Conference Proceedings - “Inform, Experience, Implement” — Teaching an intensive high school summer course

Layer, Ryan, Sherriff, Mark, Tychonievich, Luther

Year:

2012

Language:

english

File:

PDF, 179 KB

english, 2012

6

MUNC, a Long Noncoding RNA That Facilitates the Function of MyoD in Skeletal Myogenesis

Mueller, Adam C., Cichewicz, Magdalena A., Dey, Bijan K., Layer, Ryan, Reon, Brian J., Gagan, Jeffrey R., Dutta, Anindya

Journal:

Molecular and Cellular Biology

Year:

2015

Language:

english

File:

PDF, 4.70 MB

english, 2015

7

[ACM Press the 46th ACM Technical Symposium - Kansas City, Missouri, USA (2015.03.04-2015.03.07)] Proceedings of the 46th ACM Technical Symposium on Computer Science Education - SIGCSE '15 - Nifty Assignments

Parlante, Nick, Raymond, David R., Hug, Josh, Reges, Stuart, Zelenski, Julie, Osera, Peter-Michael, Stepp, Marty, Sherriff, Mark, Tychonievich, Luther, Layer, Ryan, Matthews, Suzanne J., Obourn, Allis

Year:

2015

Language:

english

File:

PDF, 278 KB

english, 2015

8

SpeedSeq: ultra-fast personal genome analysis and interpretation

Chiang, Colby, Layer, Ryan M, Faust, Gregory G, Lindberg, Michael R, Rose, David B, Garrison, Erik P, Marth, Gabor T, Quinlan, Aaron R, Hall, Ira M

Journal:

Year:

2015

Language:

english

File:

PDF, 597 KB

english, 2015

9

Efficient genotype compression and analysis of large genetic-variation data sets

Layer, Ryan M, Kindlon, Neil, Karczewski, Konrad J, Quinlan, Aaron R

Journal:

Year:

2015

Language:

english

File:

PDF, 842 KB

english, 2015

10

A Parallel Algorithm for $N$-Way Interval Set Intersection

Layer, Ryan M., Quinlan, Aaron R.

Journal:

Proceedings of the IEEE

Year:

2015

Language:

english

File:

PDF, 1.10 MB

english, 2015

11

LUMPY: a probabilistic framework for structural variant discovery

Layer, Ryan M, Chiang, Colby, Quinlan, Aaron R, Hall, Ira M

Journal:

Year:

2014

Language:

english

File:

PDF, 1.28 MB

english, 2014

12

Combating subclonal evolution of resistant cancer phenotypes

Brady, Samuel W., McQuerry, Jasmine A., Qiao, Yi, Piccolo, Stephen R., Shrestha, Gajendra, Jenkins, David F., Layer, Ryan M., Pedersen, Brent S., Miller, Ryan H., Esch, Amanda, Selitsky, Sara R., Park

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 5.99 MB

english, 2017

13

GIGGLE: a search engine for large-scale integrated genome analysis

Layer, Ryan M, Pedersen, Brent S, DiSera, Tonya, Marth, Gabor T, Gertz, Jason, Quinlan, Aaron R

Journal:

Year:

2018

Language:

english

File:

PDF, 606 KB

english, 2018

14

Publisher Correction: Combating subclonal evolution of resistant cancer phenotypes

Brady, Samuel W., McQuerry, Jasmine A., Qiao, Yi, Piccolo, Stephen R., Shrestha, Gajendra, Jenkins, David F., Layer, Ryan M., Pedersen, Brent S., Miller, Ryan H., Esch, Amanda, Selitsky, Sara R., Park

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 237 KB

english, 2018

15

An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder

Werling, Donna M., Brand, Harrison, An, Joon-Yong, Stone, Matthew R., Zhu, Lingxue, Glessner, Joseph T., Collins, Ryan L., Dong, Shan, Layer, Ryan M., Markenscoff-Papadimitriou, Eirene, Farrell, Andre

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 8.22 MB

english, 2018

16

Vcfanno: fast, flexible annotation of genetic variants

Pedersen, Brent S., Layer, Ryan M., Quinlan, Aaron R.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

17

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features

Simovski, Boris, Kanduri, Chakravarthi, Gundersen, Sveinung, Titov, Dmytro, Domanska, Diana, Bock, Christoph, Bossini-Castillo, Lara, Chikina, Maria, Favorov, Alexander, Layer, Ryan M, Mironov, Andrey

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 2.46 MB

english, 2018

18

Nuclear Scaffold Attachment Sites within ENCODE Regions Associate with Actively Transcribed Genes

Keaton, Mignon A., Taylor, Christopher M., Layer, Ryan M., Dutta, Anindya, Sullivan, Beth

Journal:

Year:

2011

Language:

english

File:

PDF, 750 KB

english, 2011

19

Whole-genome analysis for effective clinical diagnosis and gene discovery in early infantile epileptic encephalopathy

Ostrander, Betsy E. P., Butterfield, Russell J., Pedersen, Brent S., Farrell, Andrew J., Layer, Ryan M., Ward, Alistair, Miller, Chase, DiSera, Tonya, Filloux, Francis M., Candee, Meghan S., Newcomb,

Journal:

npj Genomic Medicine

Year:

2018

Language:

english

File:

PDF, 1.17 MB

english, 2018

20

SV-plaudit: A cloud-based framework for manually curating thousands of structural variants

Belyeu, Jonathan R, Nicholas, Thomas J, Pedersen, Brent S, Sasani, Thomas A, Havrilla, James M, Kravitz, Stephanie N, Conway, Megan E, Lohman, Brian K, Quinlan, Aaron R, Layer, Ryan M

Journal:

Year:

2018

Language:

english

File:

PDF, 20.73 MB

english, 2018

21

A map of constrained coding regions in the human genome

Havrilla, James M., Pedersen, Brent S., Layer, Ryan M., Quinlan, Aaron R.

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 3.45 MB

english, 2018

22

webGQT: A Shiny Server for Genotype Query Tools for Model-Based Variant Filtering

Arumilli, Meharji, Layer, Ryan M., HytÃ¶nen, Marjo K., Lohi, Hannes

Journal:

Frontiers in Genetics

Year:

2020

Language:

english

File:

PDF, 1.66 MB

english, 2020

23

Regulatory sharing between estrogen receptor Î± bound enhancers

Carleton, Julia B, Ginley-Hidinger, Matthew, Berrett, Kristofer C, Layer, Ryan M, Quinlan, Aaron R, Gertz, Jason

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 3.42 MB

2020

24

Mapping and characterization of structural variation in 17,795 human genomes

Abel, Haley J., Larson, David E., Regier, Allison A., Chiang, Colby, Das, Indraniel, Kanchi, Krishna L., Layer, Ryan M., Neale, Benjamin M., Salerno, William J., Reeves, Catherine, Buyske, Steven, Mat

Journal:

Year:

2020

File:

PDF, 5.61 MB

2020

25

The structural variation landscape in 492 Atlantic salmon genomes

Bertolotti, Alicia C., Layer, Ryan M., Gundappa, Manu Kumar, Gallagher, Michael D., Pehlivanoglu, Ege, Nome, Torfinn, Robledo, Diego, Kent, Matthew P., RÃ¸sÃ¦g, Line L., Holen, Matilde M., Mulugeta, T

Journal:

Nature Communications

Year:

2020

File:

PDF, 1.79 MB

2020